PHG-based barley pangenome graphs for sequence mapping and haplotype analysis

Manual curation of selected DNA motifs and cis regulatory sites, mostly from plants

Website source of the Computational & Structural Biology group @EEAD-CSIC

Automated pipeline for the design of PCR primers for cross-species amplification of novel sequences

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

Este material presenta algunos algoritmos para el estudio de la estructura molecular de proteínas y ácidos nucleicos. Introduce problemas (y estrategias para resolverlos) desde la estructura primaria a la cuaternaria. A lo largo hay referencias a artículos y ejercicios que a veces requieren conocimientos de programación.

From mapped reads to Single Homeologous Polymorphisms (SHPs): pipeline for phylogenetic studies of allopolyploids

Bioinformatics resources and best-practices for beginners

A collection of recipes to start scripting in the linux command line

Discovering cis-regulatory motifs in proximal promoters of plants in RSAT::Plants

Query footprintDB from the command-line

Protocol for finding informative protein families and then using them to score metagenomic sets.

A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads

Clusters of gene models or haplotypes found in barley assemblies in a similar genomic location

Suboptimal alignments and Ka, Ks calculations

This is the web interface of prunusmap, which uses an evolved barleymap search engine

Association with high-resolution climate data reveals selection footprints in genomes of barley landraces across the Iberian peninsula

PhyloSD: Phylogenomic Subgenome Detection pipeline

Pipeline for k-mer count analysis of genomic diversity

split_pairs.pl is a simple and efficient utility for pre-processing NGS sequence reads in FASTQ and FASTA formats, suited particularly for the task of sorting pair end reads and for modifying their headers with Perl-style regular expressions

Java tool to filter an input VCF file a la carte, based on HTSJDK and Apache commons CLI.

Paseo bioquímico y genómico en el jardín botánico

Software to annotate barley sequences with Gene Ontology terms

Source code of teaching material for the course Biostatistics and Bioinformatics

Sample data and source code used in the course "Methods in biostatistics and bioinformatics"

No description provided.