A bioinformatics pipeline to analyze mtDNA from NGS data

Workflow for human mitochondria analysis

Infer the dynamics of mitochondrial heteroplasmy during different life stages using population genetics and phylogenetics

Human Mitochondrial sequencing data Analysis Toolkit. Fetching information like variants, heteroplasmy/homoplasmy, etc. on mitochondrial genome from sequencing data

A pipeline for mitochondrial mutation calling

This workflow performs a variant analysis on mitochondrial genomes using the bcftools variant caller. For human samples, the workflow also performs a variant analysis using mutserve.

This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

PrecisionCallerPipeline (PCP) automatically takes Precision ID mtDNA Whole Genome Panel (Thermo Fisher Scientific, USA) FASTQ files and outputs BAM files correctly aligned to the rCRS.

A multi-species pipeline to call mitochondrial variants and create annotated reports using mity

MitoX: exploring mitochondrial variants and gene expressions from single cell sequencing assays