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ShujiaHuang/mitoquest

Human Mitochondrial sequencing data Analysis Toolkit. Fetching information like variants, heteroplasmy/homoplasmy, etc. on mitochondrial genome from sequencing data

MitoQuest: Human Mitochondrial sequencing data Analysis Toolkit

A cross-platform, efficient and practical bioinformatic analysis toolkit written in C++, which is
designed to call mitochondrial variants (SNPs and Indels), heteroplasmy/homoplasmy, MT copy number,
etc., from whole-genome sequencing(WGS) data.

Scripts to analyze mitochondrial sequencing data.

Seeking information like heteroplasmy, SNV, etc. on human Mitochondrial genome from NGS data.

Build and run testing

$ rm -rf build
$ mkdir build && cd build
$ cmake -DBUILD_TESTING=ON ..
$ make
$ ctest --output-on-failure

"What I cannot create, I do not understand" — Richard Feynman

Languages

C80.8%C++8.1%Python4.0%JavaScript2.8%M41.5%Makefile1.3%Roff1.0%Shell0.2%CMake0.2%

Contributors

Created January 7, 2025
Updated January 30, 2026