GitHunt

Yoshiaki Yasumizu

yyoshiaki

Bioinformatics

Yale University
New Haven

Organizations

Languages

Jupyter Notebook33%Python30%Shell19%Common Workflow Language7%R4%HTML4%JavaScript4%

Repos

70

Stars

127

Forks

50

Top Language

Jupyter Notebook

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Top Repositories

Repositories

70
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yyoshiaki/2026_NCAA

No description provided.

Python00Updated 3 days ago
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yyoshiaki/VIRTUS3

scRNAseq pipeline for detecting virus

Python11Updated 5 days ago
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yyoshiaki/codex_status_tmux

No description provided.

Shell00Updated 1 week ago
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yyoshiaki/2026_ICI_Nose_et_al

No description provided.

Python00Updated 1 month ago
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yyoshiaki/gene2probeFork

Pipeline for designing custom probes against human genes

Jupyter Notebook00Updated 1 month ago
YY
yyoshiaki/VIRTUS

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.

Common Workflow Language368Updated 4 years ago
cwlrnaseqvirus-detection
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yyoshiaki/VIRTUS2

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.

Common Workflow Language198Updated 2 years ago
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yyoshiaki/gwaslabFork

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

00Updated 5 months ago
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yyoshiaki/autoimmune10x_CD4T_Manuscript_2023

No description provided.

Jupyter Notebook82Updated 2 years ago
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yyoshiaki/NMFprojection

NMFprojection

Jupyter Notebook114Updated 6 months ago
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yyoshiaki/sclinker-skg

No description provided.

Shell41Updated 2 years ago
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yyoshiaki/screfmapping

No description provided.

R23Updated 1 year ago
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yyoshiaki/ikra

RNAseq pipeline centered on Salmon

Shell2920Updated 1 year ago
gencodeilluminaionsalmontranscript
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yyoshiaki/yyoshiaki.github.io

No description provided.

HTML20Updated 8 months ago
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yyoshiaki/2025_PD_PBMCCSF_scRNAseq

No description provided.

Jupyter Notebook00Updated 8 months ago
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yyoshiaki/MG_thymoma_Manuscript_2021

No description provided.

Jupyter Notebook10Updated 3 years ago
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yyoshiaki/rnaseqrecipe_chap1

AnnualUpdate

10Updated 4 years ago
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yyoshiaki/MG_Visium_2023

No description provided.

Python20Updated 1 year ago
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yyoshiaki/intropythonFork

No description provided.

Jupyter Notebook00Updated 1 year ago
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yyoshiaki/prep_GLIPH2

No description provided.

Jupyter Notebook10Updated 5 years ago
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yyoshiaki/MEnet

MEnet is a neural-net based deconvolution method for methylation data.

Python40Updated 1 year ago
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yyoshiaki/scDRS_example

No description provided.

Jupyter Notebook10Updated 3 years ago
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yyoshiaki/MEnet_manuscript

No description provided.

Python00Updated 1 year ago
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yyoshiaki/2022_shinkei_handson

No description provided.

Shell42Updated 4 years ago
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yyoshiaki/scDRSFork

Single-cell disease relevance score (scDRS)

00Updated 2 years ago
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yyoshiaki/cellxgeneVIP-gateway

No description provided.

Shell00Updated 2 years ago
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yyoshiaki/cellxgeneFork

An interactive explorer for single-cell transcriptomics data

JavaScript00Updated 2 years ago
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yyoshiaki/arcasHLAFork

Fast and accurate in silico inference of HLA genotypes from RNA-seq

Python10Updated 3 years ago
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yyoshiaki/SoloTEFork

No description provided.

Python01Updated 3 years ago
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yyoshiaki/2023_schack

No description provided.

Jupyter Notebook00Updated 3 years ago

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Yoshiaki Yasumizu (yyoshiaki) | GitHunt