Vladimir (Vlad) Kiselev
wikiselev
Building Scalable Bioinformatics & AI Solutions | Cloud Infrastructure, Pipelines & Data Science Expert, Single-Cell, Drug Discovery
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Top Repositories
An interactive tool for the unsupervised clustering of cells from single cell RNA-Seq experiments.
Simple but essential bioinformatics algorithms
"Perturbations of PIP3 signalling" paper
Repositories
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Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.
A Python web application calling Microsoft graph that is secured using the Microsoft identity platform
The personal website framework for Hugo. Demo at
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List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
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Repository to host tool-specific module files for the Nextflow DSL2 community!
An interactive tool for the unsupervised clustering of cells from single cell RNA-Seq experiments.
Analysis of single cell RNA-seq data course
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Scripts for software installations for a new Mac
Simple generator of DNA barcodes for sequencing experiments
A website for the Orthodox Parish of St Ephraim, Cambridge, UK
Simple but essential bioinformatics algorithms
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Docker image for tidyverse with some extra packages
Tools for handling Unique Molecular Identifiers in NGS data sets
AWS JavaScript S3 Explorer is a JavaScript application that uses AWS's JavaScript SDK and S3 APIs to make the contents of an S3 bucket easy to browse via a web browser.
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
"Perturbations of PIP3 signalling" paper
My personal website
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
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Setup a kubernetes cluster
Scalable integration of single cell RNAseq data for batch correction and meta analysis
A DSL for data-driven computational pipelines
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
A proof of concept of RNAseq pipeline