Daniele Capocefalo

single cell foundation model for Gene network inference and more

Molecular interactions inference from single-cell multi-omics data

create sankey diagrams with matplotlib

Single-cell multi-omics integration using Optimal Transport

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

a Python/based tool for the construction of MultiLayered Networks from publicly available data

No description provided.

Tissue of Origin Predictor of Onco-Samples

jupyther notebook comparing reproducibility of single-cell network inference algorithms

Scanpy use cases.

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

No description provided.

Plots Meaningful Representations of Complex Networks

A curated list of awesome Bioinformatics libraries and software.

A curated list of reproducible research case studies, projects, tutorials, and media

Slides and introductiory material for getting started with Git!

A high performance python package for network analysis based on non canonical metrics

An integrative annotator of human Copy Number Variants using functional genomic features

compbio notes and unix shell commands