Taavi Päll

Scripts related to paper 'Rhizosphere microbiome ST' (TBD)

Metagenomics workflow

Run Rstudio server in slurm cluster.

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Clustering cONtigs with COverage and ComposiTion

No description provided.

Python wrapper for Zenodo REST API

No description provided.

Apptainer in Docker!

Jupyter notebooks, jobscripts and other files for the "Getting started with AI on LUMI" workshop

No description provided.

testing_exercise

Creating dynamic documents with quarto

This is demo repo of 2023 R stats course

statsblog repo

hugo webpage

GTI mikroskoopia arvestus suvi-dets 2016

Add height profile to R leaflet map using leaflet.elevation plugin

Code used to generate summaries, models and figures for article "A field-wide assessment of differential high throughput sequencing reveals widespread bias".

Docker image for analyses using RStudio and Python-Conda

Run VS Code on a remote server.

This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation

No description provided.

Reproducible data analysis in R course

R in a Singularity container

Singularity image running R tidyverse + some other libraries

No description provided.

No description provided.

openambit

Web app for visualizing pathogen evolution