Serghei Mangul

This is the GitHub repository for our recent study "A comprehensive analysis of the usability and archival stability of omics computational tools and resources." Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.

MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.

reusability

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.

No description provided.

A computational tool for processing and differentiating PCR duplicates from biological duplicates

This project includes simulated and 'golden standard' datasets, software and scripts that we used to benchmark error correction tools

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CNV of V genes

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read.aligment.review

new EC

rna.seq.pipeline for hoffman2

Create graphics with a hand-drawn, sketchy, appearance

This project contains the links to the datasets, software and code that was used for our study "ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues"

Scripts and commands we used in our study : Profiling immunoglobulin repertoires across multiple human tissues by RNA Sequencing

Robustness of the read alignment algorithms

No description provided.

Seeing Beyond the Target (SBT) - computational protocol to process off target reads in WXS experiments

results for running SBT on TCGA and OP datasets

DJoin

miscellaneous

systematic library of reference genomes

my public presentations

UNIX command like with Colaboratory - Google

HapIso reconstructs the haploid transcriptome of a diploid organism from long single molecule reads

CMR

No description provided.

No description provided.

prepared metadata for GTEx project