SFU Medical Image Analysis Lab
sfu-mial
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Datasets for skin image analysis
Official code for "DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images". A data generation pipeline for creating photorealistic in-the-wild synthetic dermatalogical data with rich multi-task annotations for various skin-analysis tasks.
VascuSynth is short for Vascular Synthesizer: An algorithm and accompanying software for synthesizing vascular or other tubular, tree-like structures
[MICCAI ISIC 2024] Code for "Segmentation Style Discovery: Application to Skin Lesion Images"
Repositories
40Official code for "DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images". A data generation pipeline for creating photorealistic in-the-wild synthetic dermatalogical data with rich multi-task annotations for various skin-analysis tasks.
Datasets for skin image analysis
No description provided.
VascuSynth is short for Vascular Synthesizer: An algorithm and accompanying software for synthesizing vascular or other tubular, tree-like structures
[ISBI '25 Best Paper] Disentangled PET Lesion Segmentation
[MICCAI ISIC 2025 Oral] Inter-Annotator Variability in Skin Lesion Segmentation
[MICCAI ISIC 2024 Oral] Lesion Elevation Prediction from Skin Images Improves Diagnosis
Addresses the problem of reconstructing images acquired by diffuse optical tomography using deep learning.
Mirror of https://github.com/kakumarabhishek/Corrected-Skin-Image-Datasets.
No description provided.
[MICCAI ISIC 2024] Code for "Segmentation Style Discovery: Application to Skin Lesion Images"
Segment-Like-Me: 1-shot image segmentation using Stable Diffusion
Official Code for "Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields"
A Julia package to detect contacts below the precision of a superresolution microscope between 2 subcellular organelles in 2-channel superresolution (STED) microscopy. Mirror of https://github.com/bencardoen/SubPrecisionContactDetection.jl
No description provided.
No description provided.
This repository provides code for training, inference of endoplasmic reticulum segmentation method nERdy+, and the analysis of the dynamics presented in the paper nERdy: network analysis of endoplasmic reticulum dynamics
Code supporting our NeurIPS paper MaskTune: Mitigating Spurious Correlations by Forcing to Explore
CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. Mirror of https://github.com/arezou-pakzad/CIRCLe
A template to accelerate the release of state of the art software accompanying papers released at Prof. Hamarneh's medicalimageanalysis.com
Repository for our deep multi-frequency fusion paper in DOT imaging.
Treatment efficacy estimation based on microscopy images on RxRx19a
Repository for our limited angle deep learning based DOT image reconstruction
Synthesize, Rank, Count; A Method for unsupervised crowd counting using latent diffusion models
Repository for our deep multitask paper in DOT imaging.
Mirror of https://github.com/jeremykawahara/skin3d
Gist to collect urls/tips/tricks/configs for setup of IDEs (VSCode, vi, neovim, cgpt, copilot, ...)
The official repository for the paper "Learning-to-Count by Learning-to-Rank", accepted as an oral presentation at CRV2023
Computational tools for single molecule localization / superresolution microscopy (point clouds). Mirror of https://github.com/bencardoen/SmlmTools.jl
Colocalization metrics and distances for images or their sparse representations. Mirror of https://github.com/bencardoen/Colocalization.jl