Scott Cain
scottcain
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59Tool Shed repositories maintained by the Intergalactic Utilities Commission
A collection of Galaxy-related training material
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Take a list of PubMed IDs and get the geocoordinates of the last author's institution for mapping.
A (hopefully) simple script to extract data from VEuPathDB's JBrowse server
Its purpose is to inform you of bioinformatics repositories gaining popularity on GitHub by listing those repositories (with links and stats) in the repository’s README.
Data intensive science for everyone.
A LLM-powered tool for generating social media posts announcing genomes assembled by VGP.
A JBrowse 2 plugin to make a site specific help widget
stand alone seq panel that highlights subfeatures
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My config repo
simple test app for GenericGeneSeqPanel with Alliance data
Proxy to avoid CORS issues
web app for getting fasta sequences from a bgzipped fasta file
List of plugins for the JBrowse 2 plugin store.
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Creating a page to return overlapping genes for a location
Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.
testing with aws amplify
Python library to facilitate genome assembly, annotation, and comparative genomics
Example jupyter notebooks that use JBrowse
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Demo JBrowse docker config for FlyBase
JBrowse configs to replication GBrowse functionality
Scrapes the recreation.gov website to check for campsite availabilities 🏕🏕
"rsync for cloud storage" - Google Drive, Amazon Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Cloudfiles, Google Cloud Storage, Yandex Files