RNA Bioscience Initiative (RBI)

Snakemake pipeline to process nanopore aa-tRNA-seq data

No description provided.

Set up Alpine to use Positron

Bodhi slurm migration guide

R package for analysis of nanopore tRNA sequencing data

Positron extension to visualize POD5 nanopore signals

Quantification of CHIKV RNA at 28 dpi using spatial transcriptomics

Quantification of CHIKV RNA at 28 dpi using scRNA-seq

Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

HMM models of the 2A peptide and DB search results

TUI for Stockholm MSA viz/edit

Rust-based exon counting optimized for RNA-seq

Single Cell RNA PolyA Site Discovery

Lab website

Integrated analysis of CHIKV LNSC datasets

single cell RNA-seq survey of childhood medulloblastoma

Genome Interval Arithmetic in R

TUI to monitor snakemake pipelines

Python package designed to visualize gene models from GTF files and variants from VCF files.

Read bigWig and bigBed files in R

Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking

Generate probes for the 10x Genomics fixed assay

MOLB 7950: Informatics and Statistics for Molecular Biology

RNAseq analysis of ASO modulated splicing of SDCCAG8

ggplot2 geoms to outline groups of data points

No description provided.

Public-facing repo for aa-tRNA-seq pre-print

Code used to generate scRNA-seq figures from Carpentier et al.

Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments

Nanopore tRNA sequencing logistics (Old chemistry)