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Code and models for Mobile-PolypNet
SoftPQ is a tunable, robust instance segmentation metric that replaces binary matching with soft matching to enable more robust and interpretable evaluation aligned with qualitative segmentation quality.
Pipeline for kidney tissue segmentation & quantification using Normalized Raman Imaging (NoRI) with SAM & Ilastik.
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Pipeline for kidney tissue segmentation & quantification using Normalized Raman Imaging (NoRI) with SAM & Ilastik.
The Hugging Face course on Transformers
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My Personal Website
Quality control for bioimage analysis
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SoftPQ is a tunable, robust instance segmentation metric that replaces binary matching with soft matching to enable more robust and interpretable evaluation aligned with qualitative segmentation quality.
Teaching materials for Boston Bioimage Analysis Course (BoBiAC).
Course material for Global BioImaging Image Data 2025 Course in Pune India
Code-Orator is a local-first tool that helps developers quickly understand unfamiliar codebases.
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A tiny local LLM-powered text-generator that surprises you with quirky stories and encourages curious exploration.
LUTiPy is a Python package for creating aesthetically pleasing composite images from fluorescent microscopy data using complementary LUTs.
This repository contains sample images and datasets used for testing.
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BostonBIAS development site
A napari plugin that implements SAM prompts predictor
Code and models for Mobile-PolypNet
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Writing and Sharing Computational Analyses in Jupyter Notebooks