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UCL Bioinformatics Group

psipred

UCL bioinformatics group repositories

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Top Repositories

Repositories

51
PS
psipred/ted-tools

ML toolset for creating TED: The Encyclopedia of Domains

Python266Updated 1 week ago
PS
psipred/s4pred

A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

Python6514Updated 1 week ago
PS
psipred/Merizo

Fast and accurate protein domain segmentation using Invariant Point Attention

Python457Updated 2 weeks ago
PS
psipred/PFP

No description provided.

Python10Updated 1 month ago
PS
psipred/DMPfold2

Fast and accurate protein structure prediction

Python5714Updated 1 month ago
deep-learningend-to-endmultiple-sequence-alignmentprotein-structure-prediction
PS
psipred/protein-vae

Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies

Python9416Updated 2 months ago
autoencodermetal-binding-predictionprotein-sequencesprotein-structuretopologiesvariational-autoencoder
PS
psipred/psipred_react

A react port of the psipred_webserver dynamic pages

JavaScript10Updated 3 months ago
PS
psipred/merizo_search

Fast protein domain structure embedding+search tool

Python276Updated 3 months ago
PS
psipred/disopred

Protein structural disorder prediction

C++208Updated 4 months ago
disorder-predictionproteins
PS
psipred/ansible_rocky

new, united ansible repo for rocky machines

Shell01Updated 5 months ago
PS
psipred/cgdms

Differentiable molecular simulation of proteins with a coarse-grained potential

Python564Updated 6 months ago
automatic-differentiationcoarse-grainedforce-fieldpotentialprotein
PS
psipred/psipred

PSIPRED Protein Secondary Structure Predictor

Java5813Updated 6 months ago
proteinssecondary-structure-prediction
PS
psipred/DMPfold

De novo protein structure prediction using iteratively predicted structural constraints

C6016Updated 6 months ago
deep-learningprotein-sequenceprotein-structureprotein-structure-predictionresnet
PS
psipred/metapsicov

Consensus Structural contact prediction

C43Updated 7 months ago
contact-predictioncontactsproteins
PS
psipred/p53_docking

Project code for Chris Morris collab

Python00Updated 7 months ago
PS
psipred/DeepMetaPSICOV

Deep ResNet-based protein contact prediction

C204Updated 7 months ago
contact-predictiondeep-learningprotein-structureresnet
PS
psipred/hspred

Protein-protein interaction hotspot predictor

Perl30Updated 7 months ago
hotspot-predicitonprotein-structureproteins
PS
psipred/DeepCov

Fully convolutional neural networks for protein residue-residue contact prediction

Python4314Updated 9 months ago
contact-predictionprotein-structure
PS
psipred/blast_cache

PSIBLAST and BLAST cache

Python00Updated 9 months ago
blastblast-cachedevops
PS
psipred/GsRCL

repository for the GsRCL cell type identifier

Python00Updated 9 months ago
PS
psipred/server_update

Scripts and bits for the new server updating

C00Updated 10 months ago
PS
psipred/memsat-svm-pore

The version of memsat-svm that also predicts pore lining residues

Perl00Updated 11 months ago
PS
psipred/DMPmetal

repository for the DMPmetal metal binding site predictor

Python00Updated 11 months ago
PS
psipred/mempack

Membrane alpha helix packing and orientation predicrtor

Perl11Updated 1 year ago
helix-packingmembrane-proteins
PS
psipred/profile_drift_new

update for profile drift project

Python00Updated 1 year ago
PS
psipred/psipred_branding

contains all our branding files, logos and info

00Updated 1 year ago
PS
psipred/MemEmbed

Membrane protein orientation using knowledge-bases potentials

C++10Updated 1 year ago
membrane-orientationmembrane-protiens
PS
psipred/metsite

Metal ion ligand contact predictor

C++11Updated 1 year ago
metal-binding-predictionprototype
PS
psipred/dompred

Protein sequence domain predictor

Perl10Updated 1 year ago
protein-domainsprotein-structure
PS
psipred/pGenTHREADER

Protein fold recognition using strucutal and sequence template threading

C52Updated 1 year ago
fold-recognitionprotein

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