Per Unneberg

Callable Loci... and more

Snakemake workflow to run variant calling and ARG inference

No description provided.

No description provided.

Analyse, create and manipulate tree sequences.

Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annotation.

Partial reimplementation of bcftools for VCF Zarr

Cookiecutter for snakemake slurm profile

NBIS revealjs Quarto extension

Exploratory data analysis of d4 coverage files

NBIS course quarto template

This is the development home of the workflow management system Snakemake. For general information, see

Repository to host tool-specific module files for the Nextflow DSL2 community!

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

NBIS project administration utilities

GenomeLens GFF file parser

Convert bioinformatics file formats to Zarr

Manuscript and associated scripts for vcf-zarr publication

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No description provided.

A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync.

The D4 Quantitative Data Format

Statistical genetics toolkit

Python utilities to work with d4 coverage files

Tree sequence workflow

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Infer the age of ancestral nodes in a tree sequence.

Utilities for evaluating inferred tree sequences

Whole genome tree sequence analyses

JupyterLite test for pgip