Olivier Gimenez
oliviergimenez
Scientist. Statistical ecology. Modelling and conservation sciences.
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Material for a workshop on Bayesian stats with R
Introduction to GIS and mapping in R with the sf package
The material for a course on Statistics for ecologists I teach every year to Master students.
material for teaching reproducible science with R and RStudio
Tidy notes I took from Dave Robinson's screencasts #TidyTuesday
Repo for a book on Bayesian capture-recapture w/ HMMs
Repositories
202Repo for a book on Bayesian capture-recapture w/ HMMs
No description provided.
Material for a book entitled Introduction to Bayesian statistics in R using brms and nimble"
My site, built with Hugo and Blogdown, and hosted on Github pages. Built and deployed with GitHub Actions from https://github.com/oliviergimenez/my_website repo.
No description provided.
fitting multievent/hmm capture-recapture model with TMB
Inferring poaching with multispecies dynamic occupancy models and hidden Markov models
No description provided.
Material for a workshop on Bayesian stats with R
Analyses, R code and data for review of 2009-2019 research on capture-recapture
Source code of my website https://oliviergimenez.github.io/.
Data, code and manuscript for 'Spatial occupancy models for data collected on stream networks'
Write reproducible and dynamic documents - Introduction to R Markdown
A repository to test and learn NIMBLE
Material for a workshop on Bayesian analysis of capture-recapture data with hidden Markov models and Nimble
Introduction to GIS and mapping in R with the sf package
Material for the 2020 workshop on Bayesian integrated population modeling (IPM) using JAGS
Inferring animal social networks from capture-recapture data
No description provided.
The material for a course on Statistics for ecologists I teach every year to Master students.
Material for a workshop "Introduction to Bayesian statistics with R"
Fit multievent capture-recapture models in R (maximum-likelihood), Nimble and JAGS (Bayesian)
R package to perform goodness-of-fit tests for capture-recapture models (and various manipulations)
One-day hybrid nimble short course hosted at CNRS CEFE, Montpellier, France, 21 November 2025
Material for a workshop on reproducible science with R and RStudio
Fit GLMM with brms
My personal pipeline to species identification on camera trap pix using deep learning, detection/classification with MegaDetector and RetinaNet
Tidy notes I took from Dave Robinson's screencasts #TidyTuesday
material for teaching reproducible science with R and RStudio
Website of workshop Quantitative Methods for Population Dynamics in R