Neurogenomics Lab
neurogenomics
Neurogenomics Lab, UK Dementia Research Institute at Imperial College London
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Top Repositories
Find causal cell-types underlying complex trait genetics
Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
Comparison, benchmarking & QC of epigenetic datasets
Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) interactions to predict histone marks across diverse cell types.
Automated ingestion and conversion of various single-cell data formats, within and across species
Repositories
91Skills cookbook for agentic life sciences
Find causal cell-types underlying complex trait genetics
Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.
Shared Claude agent environment for Imperial Lab with Labstep, SharePoint, and scRNA-seq analysis
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) interactions to predict histone marks across diverse cell types.
Multi-Scale Target Explorer systematically identifies, prioritises, and visualises cell-type-specific gene therapy targets across the phenome.
Code, data and results associated with the "Rare diseases cell-typing" project.
Repo for fine-mapping the GoDMC mQTL dataset using the pan-UKB LD reference panel
Processing, benchmarking and analysis of CUT&Tag against ENCODE ChIP-seq.
Preprocessing pipeline for CUT&TAG data.
Tools for applying natural language processing (NLP) techniques to single-cell (sc) omics data.
R package for mining, calling, and importing epigenomic peaks.
echoverse module: conda environment handling
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Paper tracker for monthly journal club
Automated ingestion and conversion of various single-cell data formats, within and across species
Comparison, benchmarking & QC of epigenetic datasets
Functions for working with the Human Phenotype Ontology data
Import and analyse large-scale biomedical knowledge graphs and ontologies. 🕸️⚙️💻⚙️🕸️
Benchmark Epigenomic Profiling Methods with Motif Enrichment as Key Metric
Public archive of reports generated using MotifPeeker R package
Website for the Skene Lab
A web portal for rare disease research with bidirectional queries, integrated datasets, and interactive visualizations for exploring phenotypes, genes, and cell types.
No description provided.
Repo to wrap "scRNA-seq_Power_Analysis" work into an R package
Self-updating template for developing R packages.
Tips, intros, and documentation for the Neurogenomics Lab. :brain: 🧬
Core functions for the phenomix R package
nanoCUT&TAG analysis of 17 transcription factors (TFs) in K562 human cells