Natalie Gill

An automatically updated catalog of Snakemake plugins and their documentation

This is the development home of the workflow management system Snakemake. For general information, see

StreamLit component for Cytoscape.js

www.natbytes.com

No description provided.

No description provided.

Minimal examples to debug and illustrate the use of future.batchtools::plan(batchtools_sge) on Wynton

No description provided.

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A custom Streamlit component for link analysis, built with Cytoscape.js and Streamlit.

No description provided.

A set of code templates for use in bioinformatics projects in R and python

Optimizing the resolution parameter for Seurat's FindClusters

A set of reusable functions for bioinformatics projects, organized by language and their associated package/module

SuperFold is a pipeline that uses output data from ShapeMapper to model RNA secondary structures, including pseudoknots; identify de novo regions with well-defined and stable structures; and visualize most probable and alternative helices.

No description provided.

An R package to build a Reference Matrix and a Mixture File for CIBERSORTx

No description provided.

No description provided.

R toolkit for single cell genomics

weighted indexes for clustering evaluation

LaTeX Journal Article Templates for R Markdown

Repo containing the source code from the sachet/polysolver:v4 docker image. For reference only.

Fork of https://bitbucket.org/mcgranahanlab/lohhla

Fork of the Polysolver project

No description provided.

Somatic copy variant caller (CNV) for next generation sequencing

Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data

Copy number calling and variant classification using targeted short read sequencing

Bioinformatic command line utility to visualize protein binding domain motifs.