Michael R. Crusoe
mr-c
@common-workflow-language co-founder & CWL Project Lead. Debian Developer volunteer for the Debian-Med (bioinformatics) team. #SciWorkflows #FreeOpenStandards
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Should you cite this software?
This is the reference implementation of BioAPI 1.1 for Linux. Note for bioinformaticians: hilariously I used to work in biometrics. This will be of no use to you and is essentially unmaintained. Cheers!
Next generation of ADIOS developed in the Exascale Computing Program
Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
A translator from Intel SSE intrinsics to Arm/Aarch64 NEON implementation
Cheroot is the high-performance, pure-Python HTTP server used by CherryPy. Docs -->
Repositories
508Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
A translator from Intel SSE intrinsics to Arm/Aarch64 NEON implementation
Cheroot is the high-performance, pure-Python HTTP server used by CherryPy. Docs -->
Implementations of SIMD instruction sets for systems which don't natively support them.
the blessed package to manage your versions by scm tags
BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
Rapid builds of small Conda-based containers using micromamba.
Should you cite this software?
StreamFlow Workflow Manager
CWL Implementation of the Montage Workflow
Mypyc runtime library
Docker in Docker
No description provided.
Plot on map projections (with coastlines and political boundaries) using matplotlib
🎡 Build Python wheels for all the platforms with minimal configuration.
Next generation of ADIOS developed in the Exascale Computing Program
Provide cross platform file operations based on libuv.
MariaDB Connector/Python
A very simple tool that just performs an md5sum
Optional static typing for Python
Brian is a free, open source simulator for spiking neural networks.
This is the reference implementation of BioAPI 1.1 for Linux. Note for bioinformaticians: hilariously I used to work in biometrics. This will be of no use to you and is essentially unmaintained. Cheers!
Package providing an interface between HDF5 and R
Distributing additional HDF5 compression filters as an R package
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
:bar_chart: Computation and processing of models' parameters
Brain Modeling Toolkit
Fast hierarchical clustering routines for R and Python.
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
Sphinx extension to compile sass to css in running sphinx-build