Mikhail Shugay

Predicting oncogenic potential of gene fusions

Data and post-analysis for MAGERI project

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

Rep-Seq data analysis tutorial

A RepSeq processing swiss-knife

[Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Ultrafast TCR clustering algorithm based on geometric isometry

Highly specific clustering of T cell receptor CDR3s

Java implementation of Stochastic Ranking Evolutionary Strategy optimization algorithm.

A set of real-world RepSeq datasets used for testing the VDJtools software

THIS REPOSITORY IS DEPRECATED, FOR ISSUE TRACKER GO TO

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Metadata and some analysis for the T-cell repertoire aging study

IgBlast v1.4.0 binaries dump for homebrew, etc. Please refer to official web page

Immune repertoire sequencing data analysis packages for Linux/MacOS.

Miscellaneous tools for exome-seq: annotating SNP, counting molecules on start, etc

Analysis of duplicate reads in Illumina sequencing

Polymerase fidelity estimates

No description provided.

Tool suite for parsing V(D)J alignment results and produce AIRR standard format

MiXCR is a universal software for fast and accurate analysis of T- and B- cell receptor repertoire sequencing data.

Some basic utils for operating FASTA files

Some statistics over RNA-seq aligner junctions files