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Get L. pneumophila ST from long-read or hybrid assemblies.
Calculate sequencing depth of Illumina short-reads
Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing
Code/commands used for KGWP1 cross-niche paper
Assembly and quality assessment of Illumina short-reads
Script for ONT-basecalling
Repositories
7Get L. pneumophila ST from long-read or hybrid assemblies.
Code/commands used for KGWP1 cross-niche paper
Assembly and quality assessment of Illumina short-reads
Calculate sequencing depth of Illumina short-reads
Script for ONT-basecalling
Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing
Scripts that are part of our MSc-students' work