Lukas Weber

R package for differential discovery analyses in high-dimensional cytometry data

"Orchestrating Spatial Transcriptomics Analysis with Bioconductor" (OSTA) online book

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

Code repository for my website

Data package containing high-dimensional cytometry data sets in SummarizedExperiment and flowSet formats

Resources repository for my website

nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data

Code and data files for BU PHDS Data Visualization Workshop 2024

Online book on data preprocessing for 10x Genomics Visium spatial transcriptomics data

List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures

Method for segmentation of spatial domains with smooth boundaries and clustering in spatial transcriptomics

Data package containing single-nucleus and spatially-resolved gene expression data from the human locus coeruleus (LC)

R package for detection of differential exon usage in RNA-seq and exon microarray data

Visualization functions for spatial transcriptomics data in R

Collection of spatial transcriptomics datasets in SpatialExperiment R/Bioconductor format

Slides for lesson on "Git and GitHub for R Projects with RStudio"

Demo repository for git / GitHub lesson

Backup of gh-pages branch from previous version of OSTA repo

No description provided.

An R Package for Geneset Enrichment Workflows

Demo repo for GitHub workshop

bookdown-formatted draft version of OSTA book

rmarkdown-formatted draft version of OSTA book

Redirect link to OSTA book

Redirect link to OSTA book

Resources for "Principles of Spatial Transcriptomics Analysis with Bioconductor" book

Worked example showing how to cluster and visualize flow/mass cytometry data using FlowSOM and Rtsne

BiocBook

CyTOF example data sets: BCR-XL

Scripts to reproduce analyses and figures in nnSVG paper