Laura White
lkwhite
Colorado RNA biologist. Direct RNA sequencing, nanopore and tRNA enthusiast.
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Repos
25
Stars
9
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1
Top Language
Python
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Top Repositories
Automate initializing reproducible Quarto + Jupyter + GitHub projects
A standardized approach to generate shared tRNA coordinate space for plotting
TRUENORTH: tRNA-Resolved Utility for Evaluating Northern Oligo Reference Targets via Hybridization - A Shiny app for designing specific northern blot probes for tRNA detection
Beginner Python Course
Snakemake pipeline to process nanopore aa-tRNA-seq data
Python 3 API wrapper for Garmin Connect to get statistics and set activities
Repositories
25TRUENORTH: tRNA-Resolved Utility for Evaluating Northern Oligo Reference Targets via Hybridization - A Shiny app for designing specific northern blot probes for tRNA detection
A standardized approach to generate shared tRNA coordinate space for plotting
Automate initializing reproducible Quarto + Jupyter + GitHub projects
Beginner Python Course
Snakemake pipeline to process nanopore aa-tRNA-seq data
Python 3 API wrapper for Garmin Connect to get statistics and set activities
Methylation/modified base calling separated from basecalling.
Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing
Extract and plot data from ONT direct RNA Seq alignments
Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"
Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* et al., Nature Biotech 2021)
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analysis and workflow for twoprime-seq
Problem Set 5 for MOLB 7621
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tidiers for the R builtin datasets
Problem Set 2 for MOLB 7621
Sample problem set
Data sets for MOLB 7621
Peer Assessment 1 for Reproducible Research
Repository for Programming Assignment 2 for R Programming on Coursera
Plotting Assignment 1 for Exploratory Data Analysis
The Leek group guide to data sharing