Kohl Kinning
kohlkopf
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Repositories
35Briny Grove Website
Personal website displaying resume, projects, and blog posts.
Aggregate results from bioinformatics analyses across many samples into a single report.
No description provided.
No description provided.
Exploration of metagenomic data from virus particles dislodged from HVAC filters located in double-occupancy university dormitory rooms (Rosario, 2018).
No description provided.
R toolkit for single cell genomics
Detect doublets in single-cell RNA-seq data
Sound processing in R using the package tuneR
Hashtag-based population analysis with twitter data using genomics techniques
No description provided.
Collection of useful ImageJ macros, probably .ijm format
Short workshop on UNIX usage and single-cell analysis with Lewis & Clark College undergraduates as the audience
Short workshop on SSH tunneling and single-cell analysis with 2018 BGMP cohort as the audience
R package for segmentation, registration and generating web-based brain atlases from microscope images
Run Rstudio server on remote host with SLURM using a SOCKS5 tunnel.
No description provided.
Simulate metagenomic short reads from one or more populations.
Genotyping Uncertainty with Sequencing data - Linkage Disequilibrium
Official code repository for GATK versions 4 and up
Plot protein binding motifs on an image of the axon and flanking introns with Python
Script for batch alignment using STAR for use after the index is generated from the genome.
Tools for handling Unique Molecular Identifiers in NGS data sets
Demo of working on Github as a team
A quick guide to working as a team on Github
No description provided.
Sparkling Water for R
No description provided.
2017 UO BGMP Cohort, Genomics Techniques Lab Notebook documents