Jacques van Helden
jvanheld
Professor of Bioinformatics at Aix-Marseille Université; Co-director of the Institut Français de Bioinformatique (IFB), French node of ELIXIR
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Top Repositories
Theory, methods and practicals for the statistical analysis of biological data.
Analysis of insertions in the genomes and proteins of coronaviruses. Illustration: AvH. (2020). Covid-19 cracked <http://doi.org/10.5281/zenodo.3734643>
Cours “Statistiques avec R" pour l'Ecole de Bioinformatique Aviesan
Statistical analysis of Touret's in vitro screening for molecules inhibiting SARS-CoV-2 infection. Illustration: AvH. (2020). Covid-19 cracked (http://doi.org/10.5281/zenodo.3734643).
Course on the analysis of cis-regulatory elements from genomic sequences
Repositories
34Supports du cours "Probabilités et statistiques pour la biologie" (SBGAU14L) enseigné en M1 immuno/BSG/bioinformatique d'Aix-Marseille Université
Support for the course "Bioinformatica & Estadistica II", 2nd year Licenciatura en Ciencias Genomicas, UNAM, Cuernavaca.
Cours d'introduction à la bioinformatique, 2ème licence en Sciences de la vie, Aix-Marseille Université (L2 SV AMU)
No description provided.
Participation to the IBIS nebchmarking for motif discovery approaches
Theory, methods and practicals for the statistical analysis of biological data.
Python code for the AdventOfCode challenges
Analysis of SARS-CoV-2 read counts versus metagenomic content for Huanan Seafood market sequencing data from Chinese CDC. Analysis built on top of Jesse Bloom's results.
No description provided.
Evaluation of multivariate analysis methods for the supervised classification of RNA-seq data
Computational Biology course of the Master in Computational and Mathematical Biology
Cours Nature & Culture 3 de la licence Sciences et Humanités d'Aix-Marseille Université
Databases of transcription factor binding motifs for the software suite Regulatory Sequence Analysis Tools (RSAT)
Cours “Statistiques avec R" pour l'Ecole de Bioinformatique Aviesan
Packages under development, which are used as support to the course "Statistics for bioinformatics" and the accompanying book.
Support (slides, practicals) for bioinformatics courses by Jacques van Helden
Scripts for creating a Docker container with RSAT
No description provided.
Conda recipes for the bioconda channel.
Statistical analysis of Touret's in vitro screening for molecules inhibiting SARS-CoV-2 infection. Illustration: AvH. (2020). Covid-19 cracked (http://doi.org/10.5281/zenodo.3734643).
Analysis of insertions in the genomes and proteins of coronaviruses. Illustration: AvH. (2020). Covid-19 cracked <http://doi.org/10.5281/zenodo.3734643>
Cours Nature et Culture de la licence Sciences et Humanités, Aix-Marseille Université
Probabilités et statistiques pour la biologie - STAT1 - cours AMU SBBAU16L
Course on the analysis of cis-regulatory elements from genomic sequences
Tutorials for the use of IFB NNCR
files that used to be in the RSAT repository, but were only used by NeAT, which is not functional anymore
some, tentative snakemake workflows developer by Bruno Contreras, Jaime Castro-Mondragon, Claire Rioualen and Jacques van Helden in 2016, not maintained since then.
Repository with information about the BioHackathon hosted in Paris in Nov 2018
BioHackathon event website
Shared code for the GREEKC training hackathon on interoperability between gene regulation databases/tools