Jacob Silterra

Parametric dimensionality reduction methods.

Python / Tensorflow / Keras implementation of Parametric tSNE algorithm

Benchmark for LLM-based Agents in Computational Biology

A language model suite for numbering antigen receptor sequences.

Simple streamlit web app for evaluating the performance of a risk prediction model. Intended for use with Mirai and Sybil.

(Fork of) Official repository for the Boltz-1 biomolecular interaction model

🤗 PEFT: State-of-the-art Parameter-Efficient Fine-Tuning.

Framework providing pythonic APIs, algorithms and utilities to be used with Modulus core to physics inform model training as well as higher level abstraction for domain experts

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

OSS Implementation of DICOMweb standard

Computations and statistics on manifolds with geometric structures.

Implementation of approximated tSNE algorithm. See "Approximated and User Steerable tSNE for Progressive Visual Analytics"

Repository of code used for text processing tutorial series

Cookiecutter template for ML projects

Image augmentation library in Python for machine learning.

Simple experiments in reinforcement learning

napari: a fast, interactive, multi-dimensional image viewer for python

Multiplicative LSTM for Recommendations

Longformer: The Long-Document Transformer

🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.

Library of deep learning models and datasets designed to make deep learning more accessible and accelerate ML research.

Examples of using sparse attention, as in "Generating Long Sequences with Sparse Transformers"

Efficient GPU kernels for block-sparse matrix multiplication and convolution

Generative Tensorial Reinforcement Learning (GENTRL) model

The Open Source Dictionary

Fork from code.google.com/p/lava-dna

Numpy main repository

Integrative Genomics Viewer.

CellProfiler mirror of the SVN repository. Note that currently, this repository is updated manually from a git-svn clone of the official SVN repository (see Cloning_in_git.txt).

Scipy main repository