John Chilton
jmchilton
Research software developer for @galaxyproject and co-founder of @common-workflow-language. I turn McDonald's hash browns into pull requests.
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Top Repositories
Deprecated repository GOTO https://github.com/galaxyproject/galaxy
Fork of collectl taliored for applications at MSI.
My local changes to PepNovo (http://proteomics.ucsd.edu/Software/PepNovo.html)
Converts Python-like (re) regular expressions to JavaScript RegExp instances
Download and parse GitHub Actions CI artifacts and logs for LLM analysis.
Galaxy Github repository BETA 2. May be destroyed and recreated if additional post-conversion problems are found (but post-conversion commits on this repo will be reapplied to any recreations). Full details:
Repositories
201Obsidian Vault for Research Notes about Galaxy's Implementation
Claude Plugin Marketplace for My Personal Plugins.
My local changes to PepNovo (http://proteomics.ucsd.edu/Software/PepNovo.html)
Pydantic Models for GA4GH Task Execution Service.
No description provided.
claude slash commands for the way jmchilton works
Galaxy Architecture Review Commands
No description provided.
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Download and parse GitHub Actions CI artifacts and logs for LLM analysis.
Detect and parse CI artifact types for test frameworks and linters.
No description provided.
The uncompromising Python code formatter
Github Action to run isort
Emulate the Galaxy job files API for Pulsar testing.
No description provided.
No description provided.
Fork of collectl taliored for applications at MSI.
Converts Python-like (re) regular expressions to JavaScript RegExp instances
Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, Roles) to appropriate job destinations based on a configurable yaml file.
A shared database of rules for Total Perspective Vortex used by the usegalaxy.* federation.
Galaxy Github repository BETA 2. May be destroyed and recreated if additional post-conversion problems are found (but post-conversion commits on this repo will be reapplied to any recreations). Full details:
A packer.io configuration for building out Galaxy (http://galaxyproject.org/) tool development environments.
Galaxy Workflows maintained by the Intergalactic Workflow Commission
Deprecated repository GOTO https://github.com/galaxyproject/galaxy
Pyfilesystem2 implementation for Dropbox
The project lets you package up a Wine environment into a single shell script for distribution to other Linux instances or users.
My local mirror of SVN repository for SnpEffect (http://svn.code.sf.net/p/snpeff/code/SnpEffect/trunk/).
A repository for the schemas used for the Data Repository Service.