Joshua Levy
jlevy44
Exploring data-driven solutions to public health problems.
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Repos
70
Stars
133
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65
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Python
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Top Repositories
A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology
Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.
Exploring Fun and Useful AI Projects with Friends
Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.
GCN4R Package
Extract meaningful interactions from machine learning models to obtain machine-learning performance with statistical model interpretability.
Repositories
70Exploring Fun and Useful AI Projects with Friends
No description provided.
Levy Lab Website: https://jlevy44.github.io/levylab/
A robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5828-5
Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.
No description provided.
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Scripts I wrote when I first learned python
No description provided.
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A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology
No description provided.
GCN4R Package
No description provided.
No description provided.
Tutorial for EDIT interns on basic components of PyTorch workflow. Can be used as quick script for pretraining image classification models / extracting features with traditional image folder classes, with focus in histology.
Growing list of submission scripts for HPC for quick hacking.
Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.
Modular framework for deep learning predictions on methylation data.
No description provided.
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Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
Data Apps & Dashboards for Python. No JavaScript Required.
No description provided.
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Extract meaningful interactions from machine learning models to obtain machine-learning performance with statistical model interpretability.
Visium data processing scripts
See application demo: https://arcticai.demo.levylab.host.dartmouth.edu/
💎 🐳 A super customizable Jekyll theme for personal site, team site, blog, project, documentation, etc.