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Welcome to the world of Mamba! This repository is a curated collection of papers, tutorials, videos, and other valuable resources related to Mamba.
List of protein (enzymes and PPIs) conformations and molecular dynamics using generative artificial intelligence and deep learning
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
XPert: A Knowledge-Informed Dual-Branch Transformer Model for Predicting Drug-Induced Cellular Perturbation Effects
Repositories
77No description provided.
XPert: A Knowledge-Informed Dual-Branch Transformer Model for Predicting Drug-Induced Cellular Perturbation Effects
Welcome to the world of Mamba! This repository is a curated collection of papers, tutorials, videos, and other valuable resources related to Mamba.
Monoclonal Antibody GEnerator (MAGE) - a fine-tuned LLM for generating paired heavy-light antibody variable sequences with predicted binding specificity to an input antigen prompt sequence
No description provided.
A final sanity checklist to help your CS paper get accepted, not desk rejected.
Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)
Official implementation of the paper: "DeFoG: Discrete Flow Matching for Graph Generation"
No description provided.
MMaDA - Open-Sourced Multimodal Large Diffusion Language Models
The Family of Diffusion Protein Language Models (DPLM)
No description provided.
No description provided.
No description provided.
List of protein (enzymes and PPIs) conformations and molecular dynamics using generative artificial intelligence and deep learning
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
No description provided.
This is the GitHub repository for our ICLR22 paper: "You are AllSet: A Multiset Function Framework for Hypergraph Neural Networks"
Bi-Directional Equivariant Long-Range DNA Sequence Modeling
Official PyTorch implementation for paper: Diffusion-GAN: Training GANs with Diffusion
A simple but complete full-attention transformer with a set of promising experimental features from various papers
End-To-End Molecular Dynamics (MD) Engine using PyTorch
No description provided.
A Unified Library for Parameter-Efficient and Modular Transfer Learning
No description provided.
[ICLR 2024] "Latent 3D Graph Diffusion" by Yuning You, Ruida Zhou, Jiwoong Park, Haotian Xu, Chao Tian, Zhangyang Wang, Yang Shen
Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
Diffusion Image Mamba
Papers about pretraining and self-supervised learning on Graph Neural Networks (GNN).
The implementation of the paper "Multi-Modal Representation Learning for Molecular Property Prediction: Sequence, Graph, Geometry".