Top Repositories
structural variant database software
Generate Panel of Normals, models or other similar references from lots of samples
Test data to be used for automated testing with the nf-core pipelines
Conda recipes for the bioconda channel.
Convert VCF with structural variations to CytoSure format
Repositories
31structural variant database software
Generate Panel of Normals, models or other similar references from lots of samples
Test data to be used for automated testing with the nf-core pipelines
Conda recipes for the bioconda channel.
Convert VCF with structural variations to CytoSure format
Python Koans - Learn Python through TDD
Convert RNA fusion files to SV VCF
Call and score variants from WGS/WES of rare disease patients.
TIDDIT - structural variant calling
Repository to host tool-specific module files for the Nextflow DSL2 community!
Config files used to define parameters specific to compute environments at different Institutions
No description provided.
No description provided.
mtDNA deletion and depletion signatures from wgs data
A tool for computing ASE P values based on ASEReadCounter output files
Software development guidelines at Clinical Genomics. http://www.clinicalgenomics.se/development/
Keep track of and manage analyses
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
Analysis pipeline for small-RNA sequencing data.
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
Mutation Identification Pipeline. Read the latest documentation:
Differential expression analysis using DEseq2 and Salmon
The automated protocols for Spatial transcriptomics
Python package with helper tools for the nf-core community.
Backup of active work
VWorks protocols and other files for the Agilent NGS Workstations at the Genomics facility at SciLifeLab.
Non validated protocols
No description provided.
No description provided.
Repository for the workshop "Best practices on development"