Jeronymo Dalapicolla
jdalapicolla
Professor at Universidade Federal da Paraíba Interests: R, Python, Phylogeography, Phylogenetics, Modeling and Simulations, Landscape Genomics
Languages
Top Repositories
Scripts in R for Landscape Genomics Analyses v.2
Population Genomics Pipeline used for SNPs data from VCF files.
Scripts with comments in Portuguese for performing Species Distribution Models using MaxEnt in 'biomod2' package
Scripts in R for analyses of Identification of SNPs candidates and GEA and GPA studies - PART 4 in LANDSCAPE GENOMICS PIPELINE
Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE
Suit of R-scripts to perform landscape genomic analyses
Repositories
33Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE
Scripts with comments in Portuguese for performing Species Distribution Models using MaxEnt in 'biomod2' package
Population Genomics Pipeline used for SNPs data from VCF files.
Scripts in R for analyses of Isolation by Resistance (IBR) - PART 3 in LANDSCAPE GENOMICS PIPELINE
Scripts in R for Landscape Genomics Analyses v.2
Scripts in R for analyses of Identification of SNPs candidates and GEA and GPA studies - PART 4 in LANDSCAPE GENOMICS PIPELINE
Scripts and Datasets for Phylogenomics of spiny rats - Genus Proechimys
No description provided.
No description provided.
Programs to analyse NGS data for population genetics purposes
Suit of R-scripts to perform landscape genomic analyses
script that convert vcf file into genotype data matrix to input DIYABC program.
Tutorials on phylogenetic and phylogenomic inference
Pipelines for analyzing genomic or transcriptomic data
A variational framework for inferring population structure from SNP genotype data.
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
my blog
Perl script for running multiple iBPP and BPP instances
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
No description provided.
A short tutorial on using R + markdown
A pipeline for de novo assembly of population-level sequence capture datasets.
R Port of psmc
Code used to analyse WGS data of giraffe in Coimbra et al. 2021 (https://doi.org/10.1016/j.cub.2021.04.033)
Script to edit file .loci from ipyrad to run in BP&P
Pipelines e scripts para análises em Bioinformática
Pipeline to run analyses of Population Connectivity with a list of shared loci or haplotypes and Species Distribution Models
Three-steps tutorial for filtering genomic data, estimating genetic structure, and calculating genetic diversity using a vcf
Scripts and Suplemmentary Information used in the my Ph.D. thesis
Script for estimating sample size for a germplasm/seeds bank (BAG) using allele frequency and genetic diversity of wild species/population based on SNPs