James Casbon

Ship virtualenvs as deb or rpm

A Variant Call Format reader for Python.

vertica dialect for sqlalchemy

Programming notebooks

Simple interval class for fast fasta access

Reinforcement Learning Coach by Intel AI Lab enables easy experimentation with state of the art Reinforcement Learning algorithms

Django models for ensembl

Python web server benchmarks

experiments with backbone.js, flask and mongo

Design-by-contract in Python3 with informative violation messages and inheritance

A system for parallel and distributed Python that unifies the ML ecosystem.

Small, fast HTTP client library for Python. Features persistent connections, cache, and Google App Engine support. Originally written by Joe Gregorio, now supported by community.

GenomeTools genome analysis system.

cutadapt removes adapter sequences from DNA sequencing reads

An implementation of contracts for Python.

Rewrite of codenode with backbone/mongo

Cython rectangle example using xdress generation

Python graph database framework for bioinformatics

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

Workshop for Org-mode with focus on todo-, project- and workflow-management

Sodium - Reactive Programming Library for Java, Haskell and C++ (FRP)

Open software engineering platform and fun adventure game

Tornado is an open source version of the scalable, non-blocking web server and tools that power FriendFeed.

Base16 Builder

Cython-based, NumPy-aware automatic wrapper generation for C / C++.

My vim setup

CSSR from http://masi.cscs.lsa.umich.edu/~crshalizi/CSSR/

fast, memory-efficient, pythonic (and command-line) access to fasta sequence files

extract 454 Genome Sequencer reads from a SFF file and convert them into a FASTQ formatted output

CSV but without the suck