Jaime Abraham Castro-Mondragon
jaimicore
Computational biologist. Automating processes in the computer during the days, baking during the evenings.
Languages
Top Repositories
This is a stand-alone version of RSAT matrix-clustering. This version is faster and simplified compared to the original RSAT matrix-clustering but the graphical output is still under development.
Personal dotfiles/configfiles for sharing configs between machines.
Shinyapp and scripts to create a basic interactive html checklist
My academic CV
Repositories
22Personal dotfiles/configfiles for sharing configs between machines.
No description provided.
Shinyapp and scripts to create a basic interactive html checklist
My academic CV
My academic website
Just a bunch of code that I consider useful and I wrote it here to not google about it every time is needed.
This is a template to start a dockerized project. It runs python3 by default with uv as a reference/environment manager.
This is a stand-alone version of RSAT matrix-clustering. This version is faster and simplified compared to the original RSAT matrix-clustering but the graphical output is still under development.
codespace template for nextflow workshop
codespace template for unit testing workshop
My blog: 'More Than A Black Screen'
Each file is a chunk of code to install a program in a Dockerfile running Ubuntu
In this repository we will reproduce the results of *RSAT matrix-clustering* radial tree displayed in JASPAR: https://jaspar.genereg.net/matrix-clusters/nematodes/
No description provided.
A collection of Rscripts ready to use for multiple projects. Non necessarily related to genomics/bioinformatics.
No description provided.
No description provided.
This repository contains the code to generate barplots about JASPAR (http://jaspar.genereg.net/) content.
No description provided.
No description provided.
No description provided.
No description provided.