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Code for CRISPR activation screen with single-cell RNA-seq readout studying zygotic genome activation
A curated selection of blog posts on single-cell data analysis
Interactive MOFA+
Chromatin analysis module
Get a gene expression table from transcript compatibility counts
A method for analyzing scATAC-seq experiments.
Repositories
26Chromatin analysis module
A method for analyzing scATAC-seq experiments.
Get a gene expression table from transcript compatibility counts
Interactive MOFA+
Code for CRISPR activation screen with single-cell RNA-seq readout studying zygotic genome activation
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
AnnData and MuData I/O based on Parquet files
Work in progress seqspecs for Y2AVE processing for IGVF
A curated selection of blog posts on single-cell data analysis
Annotated data.
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
A conda-smithy repository for mudata.
Demo datasets managed with Git LFS
Versioned HDF5
Dockerfile for muon
List of software packages for multi-omics analysis
The official registry of general Julia packages
Conda recipes for the bioconda channel.
Interactive MOFA+ powered by mofax and Dash
Multiplexed COVID-19 quantification
A markdown parser for docutils
No description provided.
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
SIngularity training
Multi-Omics Factor Analysis
Example used for the git course given at the EMBL btm 2017