Top Repositories
A simple command-line tool to download data from Joint Genome Institute databases
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
Retrieve annotated intron sequences from an annotated genome and classify them as minor (U12-type) or major (U2-type) using a support vector machine model.
A (faster) wrapper for NCBI's fastq-dump with some convenience functions
General-use bioinformatics scripts
Translate nucleotide --> amino acid sequence
Repositories
24Retrieve annotated intron sequences from an annotated genome and classify them as minor (U12-type) or major (U2-type) using a support vector machine model.
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
Send an email upon completion of a command-line command.
A local-first picture frame plan generator web app
Automatic academic PDF renaming utility with optional OCR
A simple command-line tool to download data from Joint Genome Institute databases
A collection of (semi) useful small bioinformatics modules
Automatically set fan speed on a Ubiquiti UNAS Pro via systemd
My résumé
Translate nucleotide --> amino acid sequence
Parallelized sequence alignment using BLAST or DIAMOND
Cloudflare DDNS (Dynamic DNS) support for UniFi OS
Plots and figures associated with https://doi.org/10.1093/nar/gkad797
Extract coding sequence(s) from a genome and annotation file
A (faster) wrapper for NCBI's fastq-dump with some convenience functions
Send an email from the command-line
Schlage Encode implementation for Home Assistant
General-use bioinformatics scripts
Reverse-complement a DNA/RNA sequence
Get the specified number of top BLAST hits from a BLAST results file
Retrieve random subsets of lines from a file
Retrieves one or more sub-sequences from a FASTA file based on location, coordinate and strand information.
Useful bash one-liners for bioinformatics.
UCM code clinic tutorials and associated files