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Tim-Lin

deepbiolab

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Repositories

48
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deepbiolab/reinforce-bio

Research on leveraging reinforcement learning to optimize bioprocess parameters and improve efficiency in biological systems.

Jupyter Notebook00Updated 1 week ago
bioprocess-optimizationbioreactorbiotechnologyddpgdeep-learningdeep-reinforcement-learninggaussian-processhybrid-modelingneuralodeprocess-optimizationreinforcement-learningsimulation
DE
deepbiolab/ilya30u30-paper-research

Inspired by Ilya Sutskever’s 2020 reading list to John Carmack, this repo reproduces and explores key AI papers, known as the "ilya30u30." Dive into detailed notes, code, and insights to deepen your understanding of foundational and advanced deep learning concepts.

HTML457Updated 1 year ago
ai-researchdeep-learningilya-sutskeverilya30u30john-carmackneural-networksnotes-and-summariespaper-reproduction
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deepbiolab/mamba-in-depth

A comprehensive learning guide for understanding S4 (Structured State Space Sequence Model) and Mamba architectures, from fundamentals through implementation, with curated resources and hands-on examples.

Jupyter Notebook71Updated 11 months ago
learning-resourcesmambastate-space-models
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deepbiolab/neural-bio

A hybrid modeling framework combining neural networks with physics-based constraints for bioreactor process optimization and control.

Python30Updated 1 year ago
bioreactorbiotechnologyhybrid-modelingneural-networksphysics-informed-neural-networkspinnprocess-optimization
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deepbiolab/TabPFNFork

⚡ TabPFN: Foundation Model for Tabular Data ⚡

Jupyter Notebook00Updated 4 months ago
DE
deepbiolab/nano-abnovo

Reproducing the core concepts from the paper "AbNovo: Constrained Preference Optimization for Multi-objective Antibody Design"

Python11Updated 11 months ago
DE
deepbiolab/nanoTabPFNFork

No description provided.

Python00Updated 8 months ago
DE
deepbiolab/nano-bo

A minimal Bayesian Optimization implementation with Gaussian Processes, designed for simplicity and educational purposes.

Python00Updated 5 months ago
bayesian-optimizationfrom-scratch
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deepbiolab/gitbo

No description provided.

Python01Updated 6 months ago
DE
deepbiolab/python-tutorials

No description provided.

Jupyter Notebook10Updated 7 months ago
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deepbiolab/data-science-hub

In-depth tutorials on data science, machine learning, statistics, and real-world analytics applications.

Jupyter Notebook00Updated 8 months ago
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deepbiolab/algorithm-implementation

python implementation for ai algorithm

Jupyter Notebook00Updated 8 months ago
DE
deepbiolab/plm-zero-to-hero

No description provided.

Jupyter Notebook00Updated 9 months ago
DE
deepbiolab/robin-evalFork

No description provided.

Python00Updated 9 months ago
DE
deepbiolab/vlm-chart-interpreter

Train a vision language model from scratch used for chart interpretation in data analysis

Python00Updated 9 months ago
clipcontrastive-language-image-pretrainingcontrastive-learningpretrainingsigliptransformervision-language-modelvision-transformervitvlm
DE
deepbiolab/agentic-ai-research

Exploring agentic AI systems: research, development, and insights.

Jupyter Notebook00Updated 10 months ago
DE
deepbiolab/healthbot

AI HealthBot Agent to provide personalized, on-demand patient education.

Python00Updated 10 months ago
DE
deepbiolab/multi-agent-ddpg

Implementation of MADDPG for cooperative-competitive multi-agent environments

Python11Updated 1 year ago
ddpgmaddpgmultiple-agentreinforcement-learning
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deepbiolab/gans-research

🎨 A step-by-step implementation of key GAN architectures from Vanilla GAN to StyleGAN3, focusing on training stability, conditional control, and high-quality image generation.

Python00Updated 11 months ago
deep-learninggansimage-generationprogressive-ganstyleganwgan
DE
deepbiolab/illustrated-alphazero

Implementation of AlphaZero, designed to demystify its core concepts and algorithms.

Python00Updated 1 year ago
alphazerodetailed-explanationreproducible-research
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deepbiolab/minimal-rl-vlm

A minimal implementation of PPO-based RL for vision-language models, designed to run on a single A100 GPU.

Python00Updated 11 months ago
DE
deepbiolab/rag-for-proteins

A demonstration of Retrieval-Augmented Generation (RAG) applied to protein analysis

Python00Updated 11 months ago
llmlocal-ragproteinsrag
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deepbiolab/gpt-bio

bioreactor modeling with autoregressive transformers for bioprocess optimization and simulation

Python00Updated 11 months ago
DE
deepbiolab/preparednessFork

Releases from OpenAI Preparedness

00Updated 11 months ago
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deepbiolab/annotated-s4Fork

Implementation of https://srush.github.io/annotated-s4

00Updated 3 years ago
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deepbiolab/antibody-bpe-tokenizer

A minimal BPE tokenizer trained from scratch for antibody heavy and light chain sequences.

Python00Updated 11 months ago
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deepbiolab/gpt2-classification-peft

How to fine-tune a GPT-2 model for medical question-pair similarity tasks using Hugging Face's PEFT (Parameter-Efficient Fine-Tuning) library and LoRA (Low-Rank Adaptation)

Jupyter Notebook00Updated 12 months ago
DE
deepbiolab/drl

Implementation of deep reinforcement learning

Jupyter Notebook00Updated 1 year ago
advantage-actor-criticalphazerocross-entropy-methoddeep-deterministic-policy-gradientdqndueling-ddqnhill-climbingmc-controlmonte-carlo-methodspolicy-based-methodpolicy-gradientppoprioritized-dqnq-learningreinforcesarsatemporal-differencetile-codingvalue-based-methods
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deepbiolab/deepbiolab.github.io

DeepBioLab is an AI-focused platform designed to explore, build, and share advanced AI algorithms. It features educational content, projects, and research on topics like deep learning, reinforcement learning, and more. Dive into algorithms, develop from scratch, and discover solutions to science problems.

HTML00Updated 1 year ago
aiai-for-scienceantibody-designbioprocess-developmentdeep-learningmachine-learningreinforcement-learning
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deepbiolab/rendercvFork

The engine of the RenderCV App

00Updated 1 year ago

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