David Lougheed

A short tandem repeat (STR) genotyping and analysis toolkit for long reads

:chains: Construct a Physical Map from Linked Reads

My Website

Extension for STRKit with components written in Rust, for improved performance.

My academic curriculum vitae & work resumé

CLI tool to generate summary statistics of long-read FASTQ files.

White-label trail guide / points-of-interest app.

No description provided.

A server for storing content for a trail guide app.

A web tool for optimally choosing eDNA primer pairs to identify a set of taxa.

Telomeric allele scoring tool for output from Telogator2.

A Django app for balancing shared costs between roommates.

Resources for the STRkit tool paper

Python CLI utilities for David's Trail Guide System.

Pairwise Sequence Alignment Library

SIMD pairwise sequence alignment

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

Raw rust bindings for htslib

A document format conversion service based on Pandoc.

Embeddable genomic visualization component based on the Integrative Genomics Viewer

Utility Python package to download Genome-in-a-Bottle data from their index files.

Extra variant file helper utilities built on top of bcftools.

A freezer management and sample tracking system for C3G

Ping receiver for keeping track of dynamic IP addresses

A drawing-based group messaging web app

doot doot beep boop

An Arduino-based project to build a frog-shaped temperature logger

Made with a team at Hack the North 2016 in 36 hours. Ranks posts on a user's screen by how much they might want to argue with them (user engagement!)