Carl Mathias Kobel

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Hjemmesidekilden til ekkeramik.dk

🦠🧬🧑‍💻📇 Microbial genomes-to-report pipeline

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My own fixes

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🪆🦖 A snakemake wrapper around Nesvilab's FragPipe-CLI. In a perfect world, this pipeline was based on Sage.

🪢👀 Generalization and parametrization of the supacow. Phase 1: Proteomics.

Conda recipes for the bioconda channel.

Link tendencies across multiple omics layers using principal components

A simple tool that annotates common hydrogenases from (microbial) genomes.

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

R package for distilling functional annotations of bacterial genomes and metagenomes

Calculate correlation between two omics data

Test battery for CompareM2.

:deciduous_tree: Create a tree using Mash distances. Fork using skani for better distance estimation.

This is the development home of the workflow management system Snakemake. For general information, see

🏋️🧑‍⚖️ To test the performance and to compare to other tools.

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Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

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BIO326 Genome sequencing; tools and analysis 2023

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CLI tool to annotate genes with KOfam

Kobelomics - Customized bioinformatic pipelines for microbial multi-omics

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A template to start out a snakemake project with

independent repo for use as submodule in repo snakemake_template