Caroline Malin-Mayor

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Python tool for monitoring bsub jobs

Website showcasing Janelia Open Science Software Intiative (OSSI) supported software projects and other software developed at Janelia.

An implementation of chunked, compressed, N-dimensional arrays for Python.

test-website

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A package for Coordinates, Rois and common operations in Coordinate spaces

Ultrack From Images to Knowledge (I2k) 2024 Workshop

Accurate segmentation of bacterial microscope images using synthetically generated image data.

Set of scripts for visualizing motile stuff in napari

Baby fork do doo do doo do doooo! A "fork" of the baby repository https://git.ecdf.ed.ac.uk/swain-lab/baby. Diverged at commit 63d6aa7a4c11426fc3aad4b39ea6c6fb50d56438.

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A Graph Attention Spatio-temporal Convolutional Networks for 3D Human Pose Estimation in Video (GAST-Net)

Autograding helpers for CDS courses.

Efficient 3D human pose estimation in video using 2D keypoint trajectories

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Scripts and helpers for the neuroglancer WebGL viewer.

Testing throughput of mongodb and postgresql as a backend for spatial graphs

A library to facilitate machine learning on multi-dimensional images.

Python wrapper of the KLB file format, a high-performance file format for up to 5-dimensional arrays

Commonly used `tensorflow` models and losses.

Block-wise task scheduling for large nD volumes.

A simple python module to compute the Hungarian matching using an LP.

Python decorators for profiling/tracing/timing a single function

Bi-partite matching of nodes to minimize component split/merge errors

Simple watershed and agglomeration library for affinity graphs.