Harry Caufield
caufieldjh
Biological and biomedical informatics by way of knowledge graphs, text mining, ontologies, data standards, applied generative AI, and such @Knowledge-Graph-Hub
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Top Repositories
🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)
ICD11 API wrapper for python3
BRRR - Biomedical Reference Range Resources
An experimental approach to generating synthetic data based on LinkML schemas.
An MCP for querying Bioportal
Repositories
68🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)
A Rails application for biological ontologies
An experimental approach to generating synthetic data based on LinkML schemas.
An MCP for querying Bioportal
GitHub Pages repository hosting www.open-bio.org content
New template for monarch repos, replaces old cookiecutter
SQL and SQLite builds of OWL ontologies
No description provided.
The BioContextAI Registry for biomedical MCP servers
Cookiecutter for making MCPs, especially those of interest to BBOP
No description provided.
Monorepo for Synapse Web projects
illustrations related to monarchinitiative.org
Managing the progress for the RDA Working Group on Fair Mappings (https://www.rd-alliance.org/groups/fair-mappings-wg/).
Mondo Disease Ontology
No description provided.
Tools for working with KGCL
ICD11 API wrapper for python3
No description provided.
No description provided.
KGX is a Python library for exchanging Knowledge Graphs
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
GPT ontological extraction tools
OBO Organized Knowledge: Training materials for becoming an OBO engineer
Data transformation framework
A curated list of awesome open source libraries to deploy, monitor, version and scale your machine learning
Semantic prefix map registry
loinc2hpo Annotation Data - JHC additions
BRRR - Biomedical Reference Range Resources
Simple Standard for Sharing Ontology Mappings