Brian M. Schilder

A collection of resources useful for Rare Disease research

Using DNA sequence models to compute Variant Effect Predictions across biobank-scale populations.

Programmatically generated curriculum vitae.

R package for easy access, manipulation, and analysis of Monarch KG data

Using Protein Language Models to compute Variant Effect Predictions across population-scale populations.

Professional website for Brian M. Schilder

BIOS interview

Generate synthetic EHR, genomics, imaging, and other data types from Python.

A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

Automatically generate and style your CV from tables.

Dataloader for applying sequence models to personalized genomics

FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

A collection of ETLs from common data formats to Medical Event Data Standard

Official repository for the ProteinGym benchmarks

Matt and Brian cure diabetes through the power of programming

Fine-mapping the APOE locus in Alzheimer's Disease GWAS

UCE is a zero-shot foundation model for single-cell gene expression data

BiocBook

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

A taxonomic toolbelt for R

No description provided.

Color Palettes and Palette Evaluation Tools

Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.

Personal profile

Latent Embedding Multivariate Regression

AnnData interoperability in R

R toolkit for the analysis of single-cell chromatin data

R package of colors for the Buenrostro Lab

Summary statistics-based association test for identifying the pleiotropic effects with set of genetic variants

Extract colour palettes from graffiti artworks.