Boas Pucker

Materials of the course WBIO-A-08 Plant Bioinformatics

PBB plasmid sequencing workflow

This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.

Instructions for all major step in a plant genome sequencing project

Collection of scripts associated with co-expression and phylogenetic analysis approach

Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation, and repelling herbivores.This repository provides additional background to the #FlavonoidFriday tweets

MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional background to the #MYB_Monday tweets

collection of figures to display on github

Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.

collection of tools for the analysis and cleaning of genome assemblies

materials and scripts used for Applied Plant Genomics

Long Read Genomics course materials

course about NGS data processing: genomics and transcriptomics

closing gaps in long read assemblies by long read walking

collection of mini tools for the BioinfToolServer

Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.

practical course about lab methods in genome research

Applied Python Programming for Life Scientists

scripts and data sets associated with Data Literacy in Plant Sciences course

Python for Life Scientists at the University of Bonn

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

automatic annotation of bHLH gene family in plants

summary of available plant genomics tools

coverage plot script for analysis of re-sequencing data

No description provided.

statistics of nanopore sequencing in PuckerLab

Co-Expression analysis tool

This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.

Python script to map functional annotation to a phylogenetic tree

Homepage of Boas Pucker listing publications and professional activities