GitHunt

Alexander Koc

alkc

@SMD-Bioinformatics-Lund

Languages

Python33%Shell22%Nextflow11%Emacs Lisp11%HTML11%R11%

Top Repositories

Repositories

53
AL
alkc/nf-core-modulesFork

Repository to host tool-specific module files for the Nextflow DSL2 community!

Nextflow00Updated 1 week ago
AL
alkc/emacs-config

Doom emacs config

Emacs Lisp00Updated 1 month ago
AL
alkc/lsp-modeFork

Emacs client/library for the Language Server Protocol

00Updated 1 month ago
AL
alkc/chlebki

Brödrecept

00Updated 3 months ago
AL
alkc/scoutFork

VCF visualization interface

HTML00Updated 4 months ago
AL
alkc/vcf

No description provided.

Python10Updated 5 months ago
AL
alkc/alkc

Config files for my GitHub profile.

00Updated 7 months ago
configgithub-config
AL
alkc/swap-monitor

No description provided.

00Updated 9 months ago
AL
alkc/nf-sentieon-long-reads

translation of sentieon-cli longreads pipeline into a nextflow pipeline

Nextflow00Updated 10 months ago
AL
alkc/nalloFork

An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.

00Updated 11 months ago
AL
alkc/emacs-conf

No description provided.

Emacs Lisp00Updated 11 months ago
AL
alkc/lisp-thingies

No description provided.

00Updated 1 year ago
AL
alkc/SVDBFork

structural variant database software

00Updated 1 year ago
AL
alkc/cmd_csv_tools

tape, tools, flamethrowers for workin with pipeline CSVs at CMD

Python00Updated 1 year ago
AL
alkc/nf-process-browser

cli utility to jump around in nextflow workdirs

00Updated 1 year ago
AL
alkc/parallel-structure

A probably over-engineered bash-script for starting parallel runs of structure for different population sizes and numbers of replicates.

Shell32Updated 1 year ago
parallelpopulation-geneticsstructure
AL
alkc/dotfiles

No description provided.

Shell00Updated 2 years ago
AL
alkc/htmx-select-paginated-table-rows

I want to select rows in a paginated table for export to TSV w/o storing state info on server or in JS

Python11Updated 2 years ago
AL
alkc/cli

No description provided.

00Updated 2 years ago
AL
alkc/rarediseaseFork

Call and score variants from WGS/WES of rare disease patients.

00Updated 2 years ago
AL
alkc/multiline-prompt

shell prompt cobbled together from code here and there

Shell00Updated 2 years ago
AL
alkc/htmx-test

let's to have amusements

Python00Updated 2 years ago
AL
alkc/alkc.github.io

Source code for my blogdown site

HTML00Updated 2 years ago
AL
alkc/surviving-nextflow

<melting face emoji>

00Updated 2 years ago
AL
alkc/flask-mongomock-example

Example of using mongomock for testing in a global mongo db class in a flask app

Python00Updated 2 years ago
flaskmongodbmongomockpytestpytest-mockpython
AL
alkc/nextflow-test

Repo for learning how 2 nextflow

10Updated 3 years ago
AL
alkc/empty-flask-app

Template repo for new flask applications.

Python00Updated 3 years ago
AL
alkc/meeting-notes

Tiny script for creating a markdown template for creating meeting notes

Shell10Updated 3 years ago
AL
alkc/apogeereader

An R package for reading Spectrawiz and Spectrovision spectral data files

R20Updated 4 years ago
apogeeps-100rspectral-dataspectrawizspectrawiz-filesspectrovisionspectrovision-filesss-110ss-120
AL
alkc/specalyzer

No description provided.

R32Updated 4 years ago

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