Alan O'Callaghan
alanocallaghan
Biomedical data - stats - programming
Languages
Top Repositories
Clone of the Bioconductor repository for the scater package.
R wrapper for the python openTSNE library
R package implementing the density-preserving data visualization tools den-SNE and densMAP
An Engine-Agnostic Deep Learning Framework in Java
QuPath documentation
Repositories
102No description provided.
QuPath documentation
Lab for quantitative bioimage analysis experiments in Python
Clone of the Bioconductor repository for the scater package.
Whatever I want it to be
QuPath - Bioimage analysis & digital pathology
Java library for accessing CZI through Zeiss's C API
No description provided.
My personal shell scripts
A QuPath extension for working with Deep Java Library (https://djl.ai)
No description provided.
R package implementing the density-preserving data visualization tools den-SNE and densMAP
No description provided.
The official QuPath extension for InstanSeg
PCAtools: everything Principal Components Analysis
High-dimensional statistics with R
An Engine-Agnostic Deep Learning Framework in Java
Reusable JavaFX tools for QuPath (and beyond)
Benchmarks for scalability code
My dot files
A QuPath extension for linking up to Python via Py4J (https://www.py4j.org)
R wrapper for the python openTSNE library
ImgLib2 RealTransform brought to QuPath
GitHub actions for QuPath and related repositories
The catalog containing QuPath extensions developed by the QuPath team
A QuPath extension to help with making screenshots
A manager for catalogs and extensions.
No description provided.
QuPath extension to run StarDist nucleus detection
QuPath extension using JPen for graphics tablet input