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Patrick Walters

PatWalters

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115
PA
PatWalters/rd_filters

A script to run structural alerts using the RDKit and ChEMBL

Python16044Updated 4 weeks ago
PA
PatWalters/pantry_of_peculiarities

Questions regarding ML in drug discovery that keep me up at night

130Updated 1 week ago
PA
PatWalters/resources

A Highly Opinionated List of Open Source Cheminformatics Resources

19729Updated 5 years ago
PA
PatWalters/practical_cheminformatics_tutorials

Practical Cheminformatics Tutorials

Jupyter Notebook1.2k211Updated 1 week ago
PA
PatWalters/resources_2025

Machine Learning in Drug Discovery Resources 2024

25429Updated 10 months ago
PA
PatWalters/marimo_chem_utils

A collection of cheminformatics utility functions for use with marimo notebooks

Python160Updated 2 months ago
PA
PatWalters/frankenrocs

No description provided.

Jupyter Notebook162Updated 1 year ago
PA
PatWalters/practical_cheminformatics_posts

Practical Cheminformatics Blog Posts

Jupyter Notebook6916Updated 1 month ago
PA
PatWalters/patwalters.github.io

No description provided.

JavaScript60Updated 1 week ago
PA
PatWalters/vibe_coding

A few vibe coding projects

HTML40Updated 1 week ago
PA
PatWalters/useful_rdkit_utils

Some useful RDKit functions

Jupyter Notebook22236Updated 2 months ago
PA
PatWalters/sfi

An implementation of the Solubility Forecast Index (SFI)

Jupyter Notebook248Updated 5 months ago
PA
PatWalters/cheminformaticsbook

These files are meant to accompany "What are our models really telling us? A practical tutorial on avoiding common mistakes when building predictive models"

R135Updated 12 years ago
PA
PatWalters/Learning_Cheminformatics

Resources for Learning Cheminformatics with the RDKit

Jupyter Notebook194Updated 6 years ago
PA
PatWalters/chembl_sim

ChEMBL Similarity Search

Python187Updated 5 years ago
PA
PatWalters/DeepLearningLifeSciencesFork

Example code from the book "Deep Learning for the Life Sciences"

41Updated 4 years ago
PA
PatWalters/marimo_cheminformatics

Practical Cheminformatics with Marimo

Python61Updated 8 months ago
PA
PatWalters/ChEMBL-Search

A simple script to extract bioactivity data from the ChEBML database

Python101Updated 5 months ago
PA
PatWalters/TS

Thompson Sampling

Jupyter Notebook7820Updated 10 months ago
PA
PatWalters/TS_2025

Latest Thompson Sampling validation

Jupyter Notebook72Updated 6 months ago
PA
PatWalters/silly_walks

Identifying silly molecules

Jupyter Notebook172Updated 3 years ago
PA
PatWalters/ChemographyKitFork

No description provided.

20Updated 2 months ago
PA
PatWalters/chem_tutorial

No description provided.

Jupyter Notebook9019Updated 4 years ago
PA
PatWalters/Free-Wilson

An implementation of the Free-Wilson SAR analysis method using the RDKit

Python6112Updated 3 years ago
PA
PatWalters/datafiles

No description provided.

21Updated 2 months ago
PA
PatWalters/solubility

An implementation of Delaney's ESOL method using the RDKit

Python6223Updated 7 years ago
PA
PatWalters/workshop

No description provided.

Jupyter Notebook6631Updated 5 years ago
PA
PatWalters/admet_baselines

ADMET baseline models

Jupyter Notebook10Updated 4 months ago
PA
PatWalters/projection_experiments

Experiments with PCA and TSNE

Jupyter Notebook41Updated 5 months ago
PA
PatWalters/bindingdb_search

Searching BindingDB with fpsim2 and duckdb

10Updated 8 months ago

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