PDB-REDO
PDB-REDO
Tools for macromolecular structure optimisation and analysis
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Application to assign secondary structure to proteins
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.
Library containing code to manipulate mmCIF and PDB files
Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures
A suite of programs to manipulate and examine mmCIF files
Repositories
18No description provided.
Application to assign secondary structure to proteins
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.
No description provided.
Application to calculate ramachandran z-scores
A session manager for PDB-REDO
Library containing code to manipulate mmCIF and PDB files
A suite of programs to manipulate and examine mmCIF files
Library containing shared code for various PDB-REDO programs
No description provided.
core pdb-redo script, tools and data files
Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures
An daemon that provides access to archived PDB-REDO entries
Web server implementation for DSSP
Application to change the entry_id of an mmCIF file
The Swiss Army knife for carbohydrate structure validation, refinement and analysis
No description provided.
Docker files to create an image you can use to build pdb-redo executables that run on older OS's like CentOS