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NBIS - National Bioinformatics Infrastructure Sweden

NBISweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

Languages

Ruby19%Shell11%HTML11%Go11%Python7%Perl7%Jupyter Notebook4%R4%SCSS4%C4%

Top Repositories

Repositories

362
NB
NBISweden/SCoRe_user_doc

SCoRe user documentation

Shell00Updated 10 hours ago
documentationscoreuser
NB
NBISweden/bird-ringing

Web-based interface and database for managing bird-ringing data

Python10Updated 21 hours ago
NB
NBISweden/workshop-scRNAseq

Single cell RNA sequencing analysis course

Jupyter Notebook238111Updated 1 day ago
NB
NBISweden/SMS-6171-22-microbiome

No description provided.

R00Updated 1 day ago
NB
NBISweden/bp-sweden-web

Website for BigPicture Sweden

SCSS00Updated 1 day ago
NB
NBISweden/workshop_omics_integration

Workshop in omics integration and systems biology

HTML8841Updated 1 day ago
integrative-omicssystems-biology
NB
NBISweden/MrBayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

C25886Updated 2 days ago
bayesian-inferencebioinformaticsmarkov-chain-monte-carlophylogeneticsresearch-tool
NB
NBISweden/assembly-project-template

This is a template for all assembly projects. Please read the instructions below on how to use it.

Shell33Updated 2 days ago
genome-analysisgenome-annotationgenome-assemblyproject-template
NB
NBISweden/chromatin-biology-tech-group

Repository of chromatin biology tech group

00Updated 2 days ago
NB
NBISweden/workshop-RNAseq

Workshop • Analysis of RNA-seq data

CSS3817Updated 2 days ago
bioinformaticsdifferential-gene-expressionmappingngsrna-seq
NB
NBISweden/AGAT

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

Perl56466Updated 3 days ago
agatgffgff-formatgtfperl-scriptsstandardisationtoolkit
NB
NBISweden/Training-Tech-shorts

Short lessons, training various Research Software Engineering tools useful to our work.

Markdown1318Updated 3 days ago
confluencehpcnextflowquartoresearch-software-engineeringterminaltips-and-tricksvscode
NB
NBISweden/scdownstreamFork

A single cell transcriptomics pipeline for QC, integration and making the data presentable

Nextflow00Updated 4 days ago
NB
NBISweden/sdafs

FUSE file system driver for the sensitive data archive with a CSI driver for use in Kubernetes

Go00Updated 4 days ago
NB
NBISweden/workshop-neural-nets-and-deep-learningArchived

NBIS workshop in Neural Nets and Deep Learning

HTML199Updated 4 days ago
NB
NBISweden/bp-landing-pages

Bigpicture project dataset landing page generator

Go00Updated 4 days ago
NB
NBISweden/data-submission-documentation

Documentation for data submissions from life science research in public repositories

Python50Updated 1 week ago
NB
NBISweden/module-dmp-dm-practices

No description provided.

Ruby11Updated 1 week ago
dmp
NB
NBISweden/module-data-publication-dm-practices

No description provided.

Ruby00Updated 1 week ago
NB
NBISweden/module-organising-data-dm-practices

No description provided.

Ruby02Updated 1 week ago
NB
NBISweden/workshop-ngsintro

Workshop • Intro to Bioinformatics using NGS data • 5 days

HTML168Updated 1 week ago
bioinformaticsngs-analysisrnasequnix-shellvariant-calling
NB
NBISweden/workshop-data-visualization-r

Materials for NBIS workshop on advanced data visualization

JavaScript33Updated 1 week ago
data-visualizationvisualizationworkshop
NB
NBISweden/teaching_literature_club

NBIS' teaching literature club

Shell11Updated 1 week ago
clubliteraturemeetingnbispedagogyteachingtlc
NB
NBISweden/sda-cli

User command line interface for the SDA

Go61Updated 1 week ago
NB
NBISweden/module-readme-markdown-dm-practices

No description provided.

Ruby00Updated 1 week ago
NB
NBISweden/aida-datahub-docs

Documentation for AIDA datahub services

10Updated 1 week ago
NB
NBISweden/NBIS-5931-lymphatics-zebrafish

Repository with code used in support project 5931

00Updated 1 week ago
NB
NBISweden/module-openrefine-dm-practices

No description provided.

Ruby03Updated 1 week ago
NB
NBISweden/GAAS

Genome Assembly and Annotation Service code

Perl21747Updated 2 weeks ago
annotationassemblycheatsheetknowledgescripts
NB
NBISweden/htsget-rsFork

Rust htsget server

Rust00Updated 2 weeks ago

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NBIS - National Bioinformatics Infrastructure Sweden (NBISweden) | GitHunt