Instituto Nacional de Medicina Genómica

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Myocardiopathies and Arhythmogenic Channelopathies

Flujos de trabajos desarrollados y automatizados en el Intituto Nacional de Medicina Genómica para el procesamiento de datos genómicos y transcriptómicos.

Respositorio del curso "Aprende a utilizar los flujos de análisis bioinformáticos internos del Inmegen"

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100 amerindian genomes

Software to compare conservation between groups of genomes

Drug Induced Liver Injury

This pipeline generates a conservation landscape based on kmer frequency

AUTOMATIC RT-PCR DATA ANALYSIS FOR SARS-COV-2 DETECTION

sequence alignment with the BWA algorithm from FASTQ to a sorted and indexed .bam

Repositorio con material del Curso-Taller Supercómputo en el INMEGEN

UseR! INMEGEN 2019

Time series analyses on fantom networks.

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Genome-wide detection of structural variants by Breakdancer max in LSF

Call variants of a bed file from a vcf file using bcftools.

Module for converting genome coordinates between diferent genome versions. Works in vcf, bam, bed, bigwig, gff, wig formats.

Designed for sum RNAseq counts from paired and unpaired readings, this mk uses awk to sum two columns from two different files whit the same record number.

Estimates variant call from indexed .bam files

Remove potential PCR duplicates using samtools rmdup.

Index a bunch of bam files using samtools

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MK for Variant annotation using VEP

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Annotate variants from a VCF, using a MK script.

Pipeline for population Branch statistics calculation

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