COMBINE lab
COMBINE-lab
COMputational BIology and Network Evolution lab
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Top Repositories
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
An efficient index for the colored, compacted, de Bruijn graph
long read RNA-seq quantification
Building the compacted de Bruijn graph efficiently from references or reads.
A rust framework to make using alevin-fry even simpler
Repositories
137A rust-native port of wfa2lib
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
No description provided.
A small, auxiliary index to massively improve parallel fastq parsing
Useful tools for working with Salmon output
An subset of Cuttlefish 1, rewritten in Rust, to provide maximal unitigs and tiling information for piscem indexing.
a native rust port of the KSW2 alignment procedure
Mapping sequencing data to De Bruijn graphs, fast
A Rust implementation of SSHash
Unofficial attempt at a Typst template for the Oxford Bioinformatics journal
long read RNA-seq quantification
A rust framework to make using alevin-fry even simpler
No description provided.
Quality Control downstream of alevin-fry / simpleaf
No description provided.
build up collections of files to check their existence
No description provided.
Rust libraries and programs focused on succinct data structures
No description provided.
No description provided.
simple and dirty internal tool for putting simulated reads into the right format for downstream consumption
An efficient index for the colored, compacted, de Bruijn graph
Building the compacted de Bruijn graph efficiently from references or reads.
No description provided.
No description provided.
No description provided.
A bit-packed k-mer representation (and relevant utilities) for rust
No description provided.
No description provided.