The Blue Brain Project

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Align and improve brain annotation atlases

Blue Brain multi-modal registration and alignment toolbox

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Blue Brain text mining toolbox for semantic search and structured information extraction

Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.

Blue Brain Nexus - A knowledge graph for data-driven science

Code Generation Framework For NEURON MODeling Language

HighFive - Header-only C++ HDF5 interface

Nexus Common Libraries

A package to synthesize artificial axons

A python package for the topological analysis of neurons.

Blue Brain Python Optimisation Library

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

Runs cells from stand-alone packages.

Scientific literature parsing tools

Neuronal morphology preparation and classification using Machine Learning.

Electrophys Feature Extraction Library

A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

Simulator optimized for large scale neural network simulations.

Converter for mod files to C code

Simple tool to compare directory contents and get differences using smart comparators.

Public tutorials around electrophysiological simulations

Extra tools to work with the Luigi library

A BBP Simulation Control application for NEURON

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Interactive visualization framework for geometrically detailed neuron simulations