Biomedical Imaging Group
Biomedical-Imaging-Group
The BIG pursues research on the development of new algorithms and mathematical tools for the advanced processing of medical and biological images
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A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging
Java (ImageJ/Fiji) software package for 3D deconvolution microscopy
ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection
PSF Generator: a PyTorch-based library to simulate point spread functions for microscopes.
An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.
A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)
Repositories
28No description provided.
PSF Generator: a PyTorch-based library to simulate point spread functions for microscopes.
Java (ImageJ/Fiji) software package for 3D deconvolution microscopy
A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging
An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.
A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)
Code accompanying "Perturbative Fourier Ptychographic Microscopy for Fast Quantitative Phase Imaging".
A class for the didactic implementation of image-processing algorithms in JavaScript.
ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection
No description provided.
No description provided.
Simulation tools for the validation of MRI reconstruction software
Joint angular refinement and reconstruction algorithm for single-particle Cryo-EM.
A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.
MiViT — Self-Supervised Learning of Molecular Diffusion using Motion-Informed Vision Transformer
Matlab Framework for MRI Simulation and Reconstruction
No description provided.
ImageJ plugin
Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)
Single Cell Classifier (SCC) is an ImageJ/Fiji plugin that aims to classify cells based on features related to their nuclei and their neighbors.
A learnable linear spline module (PyTorch)
No description provided.
DeconvolutionLab2
ImageJ plugin - Steerable Template Detector
No description provided.
The accompanying codes of the paper "Multi-Kernel Regression with Sparsity Constraint"
No description provided.
ImageJ plugin to track and mesure cells. Chiara Toniolo, Daniel Sage